CDE Detailed Report
Disease: system
Subdomain Name: Laboratory Tests and Biospecimens%2FBiomarkers
CRF: files
Displaying 51 - 79 of 79
Subdomain Name: Laboratory Tests and Biospecimens%2FBiomarkers
CRF: files
Displaying 51 - 79 of 79
| CDE ID | CDE Name | Variable Name | Definition | Short Description | Question Text | Permissible Values | Description | Data Type | Disease Specific Instructions | Disease Specific Reference | Population | Classification (e.g., Core) | Version Number | Version Date | CRF Name (CRF Module / Guidance) | Subdomain Name | Domain Name | Size | Input Restrictions | Min Value | Max Value | Measurement Type | External Id Loinc | External Id Snomed | External Id caDSR | External Id CDISC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| C58736 | Needle gauge size type other text | NeedleGaugeSizeTypOTH | The free-text field related to 'Needle gauge size type' specifying other text | The free-text field related to 'Needle gauge size type' specifying other text | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-08 12:28:36.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C55343 | Specimen hazardous triple packaged ship indicator | SpcmnHzrdTrplPackShipInd | The indicator related to whether the hazardous specimen was triple packaged for shipping | The indicator related to whether the hazardous specimen was triple packaged for shipping | Potentially hazardous biological materials are triple packaged to withstand leakage, shocks, temperature and pressure changes that occur during handling and transportation: | No;Yes | No;Yes | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55359 | Microdialysis cerebral analyte lactate measurement | MicrodiaCrbrlAnalytLactMeasr | The value of lactate in in the cerebral microdialysis analyte | The value of lactate in in the cerebral microdialysis analyte | Lactate: | Numeric Values |
"For cerebral microdialysis specimens mmol/l" |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
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| C58747 | Specimen freezing date and time | SpcmnFreezDateTime | Date (and time if applicable and known) when the specimen was frozen | Date (and time if applicable and known) when the specimen was frozen | Date and time of sample freezing | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 15:55:56.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
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| C18731 | Lab test other text | LabTestOTH | The free-text field related to 'Lab test name' specifying other text. Name representing the lab test performed on body fluid(s) and tissues. Test names are typically comprised of the analyte name, properties (%, Ratio, etc.), the type of body fluid tested and any special instructions | The free-text field related to 'Lab test name' specifying other text. Name representing the lab test performed on body fluid(s) and tissues. Test names are typically comprised of the analyte name, properties (%, Ratio, etc.), the type of body fluid tested and any special instruction | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2014-05-27 13:34:46.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations | 4000 |
Free-Form Entry |
2003746 | ||||||||
| C58427 | Biomarker specimen collected aliquot volume value | BiomrkSpecCollectAliquotVolVal | The volume per aliquot for pecimens collected from the participant/subject for biomarkers | The volume per aliquot for pecimens collected from the participant/subject for biomarker | Volume of Aliquots (uL): | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.10 | 2022-08-04 10:29:56.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
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| C55004 | Specimen centrifugation temperature value | SpecCentrifugationTempVal | The value related to temperature in a centrifuge | The value related to temperature in a centrifug | Temperature | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-04-17 14:55:46.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
degrees celsius | |||||||||
| C58737 | Blood collection tube number | BloodCollectTubeNum | Enter the number of collection tubes used | Enter the number of collection tubes used | Number of collection tubes used | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 12:40:44.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
0 | 999 | ||||||||
| C55344 | Microdialysis cerebral probe location anatomic site | MicrodiaCrbrlPrbAnatSite | Free-text field to describe the location of the probe for cerebral microdialysis specimens | Free-text field to describe the location of the probe for cerebral microdialysis specimens | Location of probe placement: | Alphanumeric |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-06-21 00:00:00.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C55360 | Microdialysis cerebral analyte lactate pyruvate ratio value | MicrdiaCrbrlAnlytLactPyrRatVal | The ratio of lactate to pyruvate in the cerebral microdialysis analyte | The ratio of lactate to pyruvate in the cerebral microdialysis analyte | L/P ratio: | Numeric Values |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
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| C58748 | Freezing method type | FreezMethdTyp | The method of freezing of the specimen | The method of freezing of the specimen | Method of freezing | Snap-frozen;Slowly cooled;Storage at -80oC;Dry ice-ethanol;Storage at -20oC;Other, specify | Snap-frozen;Slowly cooled;Storage at -80oC;Dry ice-ethanol;Storage at -20oC;Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-08 16:21:48.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C54743 | Specimen biologic source type | SpecmnBioSourcTyp | The type of biologic specimen collection source | The type of biologic specimen collection sourc | Sample source | Biological tissue;Biological fluid;Unknown | Biological tissue;Biological fluid;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C58717 | Alcoholic drink not applicable last year indicator | AlcohNALastYrInd | Indicates if the participant/subject consumed no alcohol within the past year | Indicates if the participant/subject consumed no alcohol within the past year | Date last had an alcoholic drink | N/A – has not consumed an alcoholic drink within the past year | N/A – has not consumed an alcoholic drink within the past year | Alphanumeric |
Check if the participant/subject consumed no alcohol within the past year |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-07 11:00:09.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55005 | Specimen centrifugation duration | SpecCentrifugationDur | The duration related to centrifugation | The duration related to centrifugatio | Duration | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-04-17 14:55:46.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
second | |||||||||
| C58738 | CSF/serum simultaneous collection indicator | CSFSerSimltnsCollInd | Indicate whether the CSF and serum samples were collected simultaneously | Indicate whether the CSF and serum samples were collected simultaneously | CSF and serum collected simultaneously | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 14:35:29.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55345 | Microdialysis cerebral probe number | MicrodiaCrbrlPrbNum | The number of probes used for cerebral microdialysis specimens | The number of probes used for cerebral microdialysis specimens | Number of probes: | Numeric Values |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-06-21 00:00:00.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
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| C55361 | Microdialysis cerebral novel target analyte indicator | MicrdiaCrbrlNovlTargAnalytInd | The indicator related to whether there were any novel target analytes in the cerebral microdialysis | The indicator related to whether there were any novel target analytes in the cerebral microdialysis | Any novel target analytes? | No;Yes | No;Yes | Alphanumeric |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C58749 | Freezing method type other text | FreezMethdTypOTH | The free-text field related to freezing method type | The free-text field related to freezing method type | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-08 16:35:42.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C54746 | Specimen not collected reason | SpecmnNotCollectRsn | The reason the specimen sample was excluded | The reason the specimen sample was exclude | Reason(s) sample excluded | Nervous system neoplasm;Nervous system infection;Paraneoplastic conditions;Demyelinated conditions;Inflammatory conditions;Malignancy;Liver failure;Exclusionary medication being taken;Infection at site of sample;Participant declined to provide specimen;Renal failure | Nervous system neoplasm;Nervous system infection;Paraneoplastic conditions;Demyelinated conditions;Inflammatory conditions;Malignancy;Liver failure;Exclusionary medication being taken;Infection at site of sample;Participant declined to provide specimen;Renal failure | Alphanumeric |
Certain conditions may alter biomarker composition and inclusion/exclusion should be carefully considered |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Multiple Pre-Defined Values Selected |
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| C58718 | Tobacco last consumed date and time | TbccoLastConDateTime | Date (and time, if applicable and known) the participant/subject last used tobacco | Date (and time, if applicable and known) the participant/subject last used tobacco | Date of last tobacco use (cigarette, cigar, chewing tobacco or pipe) | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-07 11:11:53.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
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| C55009 | Specimen storage temperature value | SpecStorTempVal | The temperature value for the specimen being stored | The temperature value for the specimen being store | Sample storage temperature | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-04-17 15:19:20.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
degrees celsius | |||||||||
| C58739 | CSF/plasma simultaneous collection indicator | CSFPlsmaSimltnsCollInd | Indicate whether the CSF and plasma samples were collected simultaneously | Indicate whether the CSF and plasma samples were collected simultaneously | CSF and plasma collected simultaneously | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 14:47:41.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C55346 | Microdialysis cerebral probe molecular weight limit value | MicrodiaCrbrlPrbMolWtLimVal | The field to specify the molecular weight limit for probes used for cerebral microdialysis specimens | The field to specify the molecular weight limit for probes used for cerebral microdialysis specimens | Probe molecular weight cut-off: | Numeric Values |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-06-21 00:00:00.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
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| C55362 | Multiplex platform normalization technique text | MultiplxPlatNormTechTxt | Free-text field to describe normalization techniques for multiplex platforms | Free-text field to describe normalization techniques for multiplex platforms | Normalization techniques: | Alphanumeric |
For multiplex platforms (proteomics, metabolomics, luminex assays) |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-16 14:01:43.01 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C58750 | Blood collection tube additive type other text | BldCollTubeAdditvTypOTH | The free-text field related to other blood collection tube additive type | The free-text field related to other blood collection tube additive type | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-08 16:47:13.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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| C54748 | Specimen baseline collection indicator | SpecmnBaselineCollectInd | The indicator related to baseline specimen being collected | The indicator related to baseline specimen being collecte | Baseline specimen collected | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
Collected within 12 hours of initial hospital presentation |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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| C01701 | Lab specimen collection date and time | LabSpecmnCollDateTime | Date (and time if applicable and known) when the specimen was collected | Date (and time if applicable and known) when the specimen was collected | Date and time of sample collection | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
A Consensus Protocol for the Standardization of Cerebrospinal Fluid Collection and Biobanking; Teunissen, C.E., Neurology 2009; 73: 1914-1922. | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-25 08:54:08.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
2004004 | |||||||||
| C10821 | Food last consumed date and time | FoodLstConsmDateTime | Date (and time, if applicable and known) the participant/subject last ate food | Date (and time, if applicable and known) the participant/subject last ate food | Date and time last ate | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
HUPO Plasma Proteome Project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples; Rai, A.J., Proteomics 2005, 5, 3262-3277. | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
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| C10823 | Alcohol last consumed date and time | AlcohLastConDateTime | Date (and time, if applicable and known) the participant/subject last drank alcohol | Date (and time, if applicable and known) the participant/subject last drank alcohol | Date last had an alcoholic drink | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens%2FBiomarkers | Assessments and Examinations |
Free-Form Entry |
