CDE Detailed Report
Subdomain Name: Laboratory Tests and Biospecimens/Biomarkers
CRF: Biospecimen Collection and Processing
Displaying 51 - 79 of 79
CDE ID | CDE Name | Variable Name | Definition | Short Description | Question Text | Permissible Values | Description | Data Type | Disease Specific Instructions | Disease Specific Reference | Population | Classification (e.g., Core) | Version Number | Version Date | CRF Name (CRF Module / Guidance) | Subdomain Name | Domain Name | Size | Input Restrictions | Min Value | Max Value | Measurement Type | External Id Loinc | External Id Snomed | External Id caDSR | External Id CDISC |
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C54746 | Specimen not collected reason | SpecmnNotCollectRsn | The reason the specimen sample was excluded | The reason the specimen sample was exclude | Reason(s) sample excluded | Nervous system neoplasm;Nervous system infection;Paraneoplastic conditions;Demyelinated conditions;Inflammatory conditions;Malignancy;Liver failure;Exclusionary medication being taken;Infection at site of sample;Participant declined to provide specimen;Renal failure | Nervous system neoplasm;Nervous system infection;Paraneoplastic conditions;Demyelinated conditions;Inflammatory conditions;Malignancy;Liver failure;Exclusionary medication being taken;Infection at site of sample;Participant declined to provide specimen;Renal failure | Alphanumeric |
Certain conditions may alter biomarker composition and inclusion/exclusion should be carefully considered |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Multiple Pre-Defined Values Selected |
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C58718 | Tobacco last consumed date and time | TbccoLastConDateTime | Date (and time, if applicable and known) the participant/subject last used tobacco | Date (and time, if applicable and known) the participant/subject last used tobacco | Date of last tobacco use (cigarette, cigar, chewing tobacco or pipe) | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-07 11:11:53.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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C55009 | Specimen storage temperature value | SpecStorTempVal | The temperature value for the specimen being stored | The temperature value for the specimen being store | Sample storage temperature | Numeric Values |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-04-17 15:19:20.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
degrees celsius | |||||||||
C58739 | CSF/plasma simultaneous collection indicator | CSFPlsmaSimltnsCollInd | Indicate whether the CSF and plasma samples were collected simultaneously | Indicate whether the CSF and plasma samples were collected simultaneously | CSF and plasma collected simultaneously | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 14:47:41.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C55346 | Microdialysis cerebral probe molecular weight limit value | MicrodiaCrbrlPrbMolWtLimVal | The field to specify the molecular weight limit for probes used for cerebral microdialysis specimens | The field to specify the molecular weight limit for probes used for cerebral microdialysis specimens | Probe molecular weight cut-off: | Numeric Values |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-06-21 00:00:00.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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C55362 | Multiplex platform normalization technique text | MultiplxPlatNormTechTxt | Free-text field to describe normalization techniques for multiplex platforms | Free-text field to describe normalization techniques for multiplex platforms | Normalization techniques: | Alphanumeric |
For multiplex platforms (proteomics, metabolomics, luminex assays) |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-16 14:01:43.01 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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C58750 | Blood collection tube additive type other text | BldCollTubeAdditvTypOTH | The free-text field related to other blood collection tube additive type | The free-text field related to other blood collection tube additive type | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-08 16:47:13.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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C54748 | Specimen baseline collection indicator | SpecmnBaselineCollectInd | The indicator related to baseline specimen being collected | The indicator related to baseline specimen being collecte | Baseline specimen collected | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
Collected within 12 hours of initial hospital presentation |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-24 11:38:01.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C58719 | Tobacco not applicable last year indicator | TbccoNALastYrInd | Indicates if the participant/subject used no tobacco products within the past year | Indicates if the participant/subject used no tobacco products within the past year | Date of last tobacco use (cigarette, cigar, chewing tobacco or pipe) | N/A – has not used tobacco products in the past year | N/A – has not used tobacco products in the past year | Alphanumeric |
Check if the participant/subject used no tobacco products within the past year |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-07 11:16:23.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C55323 | Specimen normal control collected indicator | SpcmnNrmlCtrlCollectInd | Indicator of whether or not normal or control samples were collected | Indicator of whether or not normal or control samples were collected | Normal/control samples collected | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C55347 | Microdialysis cerebral probe membrane length measurement | MicrodiaCrbrlPrbMembLengtMeasr | The field to specify the membrane length for probes used for cerebral microdialysis specimens | The field to specify the membrane length for probes used for cerebral microdialysis specimens | Membrane length: | Numeric Values |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.10 | 2022-08-04 10:26:34.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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C58740 | Specimen collection grossly bloody indicator | SpcmnCollectGrossBldyInd | Indicate whether the specimen collection was grossly bloody | Indicate whether the specimen collection was grossly bloody | Collection grossly bloody | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 14:56:28.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C55363 | Multiplex platform batch effect indicator | MultiplxPlatBatchEffInd | Indicator for whether there was batch effect for multiplex platforms | Indicator for whether there was batch effect for multiplex platforms | Presence of batch-effect? | No;Yes | No;Yes | Alphanumeric |
For multiplex platforms (proteomics, metabolomics, luminex assays) |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-07-16 14:01:43.01 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C58751 | Specimen expiration date | SpcmnExprtnDate | Date when the specimen will expire, if applicable | Date when the specimen will expire, if applicable | Date of sample expiration | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 16:57:15.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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C54749 | Cerebrospinal fluid collection method type | CSFCollectMethoTyp | The method related to cerebrospinal fluid (CSF) being collected | The method related to cerebrospinal fluid (CSF) being collecte | Method of CSF acquisition | Collection catheter;Lumbar Puncture;Other, specify;Sample collected from bag/reservoir | Collection catheter;Lumbar Puncture;Other, specify;Sample collected from bag/reservoir | Alphanumeric |
Collection catheters include external ventricular and lumbar drain catheters. Other mehods can include VP shunt tap. |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C58720 | Collection time mortality status indicator | CollTimeMortStatInd | Indicate whether the participant/subject is living or deceased at the time of specimen collection | Indicate whether the participant/subject is living or deceased at the time of specimen collection | Living or Deceased at time of collection | Living;Deceased | Living;Deceased | Alphanumeric |
Choose one |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-07 11:26:15.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C55325 | Specimen convalescent collected indicator | SpcmnConvalesCollectInd | Indicator of whether or not convalescent samples were collected | Indicator of whether or not convalescent samples were collected | Convalescent samples collected: | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C55348 | Device model number | DevModelNum | The model number for the device used | The model number for the device used | Model #: | Numeric Values |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 3.00 | 2013-08-28 16:08:00.453 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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C58741 | Specimen shipped indicator | SpcmnShipdInd | Indicate whether the specimen was shipped | Indicate whether the specimen was shipped | Sample shipped | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 15:00:21.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C55746 | Specimen surround dry ice shipment indicator | SpcmnSurrndDryIceShipInd | The indicator related to whether the specimen was surrounded by dry ice for shipping | The indicator related to whether the specimen was surrounded by dry ice for shipping | Samples surrounded by dry ice to maintain temperature -80C or below throughout shipment: | No;Yes | No;Yes | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C58752 | Specimen expiration not applicable indicator | SpcmnExprtnNAInd | Indicate whether there is no expiration date for the specimen | Indicate whether there is no expiration date for the specimen | Date of sample expiration | N/A - no expiration | N/A - no expiration | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 16:59:56.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C54750 | Cerebrospinal fluid collection method other text | CSFCollectMethoOTH | The free-text field related to other for method related to cerebrospinal fluid (CSF) being collected | The free-text field related to other for method related to cerebrospinal fluid (CSF) being collecte | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2017-04-11 12:19:20.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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C58721 | Lab specimen type other text | LabSpecmnTypOTH | The free-text field related to 'Lab specimen type' specifying other text | The free-text field related to 'Lab specimen type' specifying other text | Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental | 1.00 | 2020-05-07 12:40:28.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations | 255 |
Free-Form Entry |
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C55327 | Specimen serial collected indicator | SampleSerialCollectInd | Indicator of whether or not serial samples were collected over time | Indicator of whether or not serial samples were collected over time | Serial specimens collected (over time): | No;Yes;Unknown | No;Yes;Unknown | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Single Pre-Defined Value Selected |
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C55349 | Microdialysis cerebral Ictus monitoring interval | MicrodCrbrlIctusMonitorIntrvl | The period of time elapsed between ictus and monitoring for cerebral microdialysis | The period of time elapsed between ictus and monitoring for cerebral microdialysis | Time from ictus to monitoring: | Numeric Values |
For cerebral microdialysis specimens |
No references available | Adult;Pediatric | Exploratory | 1.00 | 2017-04-12 17:44:54.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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C58742 | Shipping conditions type | ShipCondTyp | Indicate the specimen shipping conditions | Indicate the specimen shipping conditions | Shipping conditions | Dry ice;Overnight;Other, specify | Dry ice;Overnight;Other, specify | Alphanumeric |
No instructions available |
No references available | Adult;Pediatric | Supplemental-Highly Recommended | 1.00 | 2020-05-08 15:03:28.0 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Multiple Pre-Defined Values Selected |
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C10823 | Alcohol last consumed date and time | AlcohLastConDateTime | Date (and time, if applicable and known) the participant/subject last drank alcohol | Date (and time, if applicable and known) the participant/subject last drank alcohol | Date last had an alcoholic drink | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
No references available | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
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C01701 | Lab specimen collection date and time | LabSpecmnCollDateTime | Date (and time if applicable and known) when the specimen was collected | Date (and time if applicable and known) when the specimen was collected | Date and time of sample collection | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
A Consensus Protocol for the Standardization of Cerebrospinal Fluid Collection and Biobanking; Teunissen, C.E., Neurology 2009; 73: 1914-1922. | Adult;Pediatric | Supplemental-Highly Recommended | 3.00 | 2013-07-25 08:54:08.2 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |
2004004 | |||||||||
C10821 | Food last consumed date and time | FoodLstConsmDateTime | Date (and time, if applicable and known) the participant/subject last ate food | Date (and time, if applicable and known) the participant/subject last ate food | Date and time last ate | Date or Date & Time |
Record the date/time according to the ISO 8601, the International Standard for the representation of dates and times (http://www.iso.org/iso/home.html). The date/time should be recorded to the level of granularity known (e.g., year, year and month, complete date plus hours and minutes, etc.). |
HUPO Plasma Proteome Project specimen collection and handling: Towards the standardization of parameters for plasma proteome samples; Rai, A.J., Proteomics 2005, 5, 3262-3277. | Adult;Pediatric | Supplemental | 3.00 | 2013-07-22 16:57:17.79 | Biospecimen Collection and Processing | Laboratory Tests and Biospecimens/Biomarkers | Assessments and Examinations |
Free-Form Entry |